CDS

Accession Number TCMCG065C22125
gbkey CDS
Protein Id XP_022683094.1
Location join(22551369..22551382,22552112..22552472,22552574..22552717,22554259..22554411,22554503..22554619,22557044..22557121,22557212..22557361,22558856..22560673,22561805..22561855,22562036..22562116)
Gene LOC101753158
GeneID 101753158
Organism Setaria italica

Protein

Length 988aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA207554
db_source XM_022827359.1
Definition RNA polymerase II degradation factor 1 isoform X2 [Setaria italica]

EGGNOG-MAPPER Annotation

COG_category A
Description HAT (Half-A-TPR) repeats
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K13217        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000243        [VIEW IN EMBL-EBI]
GO:0000245        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000395        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0005685        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006376        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0022618        [VIEW IN EMBL-EBI]
GO:0030532        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045292        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0071004        [VIEW IN EMBL-EBI]
GO:0071010        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097525        [VIEW IN EMBL-EBI]
GO:0120114        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTATTATGAAAGTTTTAGAAAGTTGGTAACATTATTGGAACAAGAGGTGACAAGTTGTGCTGCTGGAAGATTATCAGACAAGATACATACTTCGGAAATGATAGAAGCTGAAGATTCTGAATTGGATATATCAACTATTATTGCTGACTTATTTGACCAAAAAGGTGGGCATTTTAGTCCTGAAGCATTGAAGAATTACTTAGCTGCTGGGGAGAGGCTCTACAAAAGGTCCAGTAAAATTGACAAAGAAATCTGTTGCTTTGAGGCATCCGTAAAAAGGCCCTTTTTTCATGTCAAGCCACTTGATATTGATCAGCTTGAAAACTGGCACCAGTACCTTGACTATGTTGAGAAGAATGGGGATTTTGACTGGGCTGTAAAGCTCTATGAAAGGTGTTTGATCCCTTGTGCTAATTATTCAGAGTTTTGGATTCGCTACTCGGAGTATGTCGATGCTAAAGGTGGCCGAGAAATTGCAAACCATGCTCTTGTTCGAGCATCATCATGTTTTGTGAAGGGAGTTCCAACTTTCTGCATGTATTACGCGTTGTTTAAAGAGCAAATTGGTGATGCATCAGCTGCACGCTCTCTTTTTGTTAAAGCAAGCAGTAACTTCACTTCGGGTTTTTATGCTAATATCAATAGGCTGGCCAACATGGAAAAACGCATGGGAAACAGTAAAGCAGCTTCTAAGATATACGAGACAGCCATTGAGGACGCAATGCAGAAGCAGAACATAGAGTTACTTCAGGACCTGTACAGCAATTTTGCTCAATTCATATATGCGGCAAGTCATAGCATTGTGGAGGCTAAAGAAGTCTTTGTCAAGGGAATCAATCGTGTACCCTGTAAACCACTGATTAAGGGACTCATACAGTTCATGAGCACACATGGAGGACCTACAGAAATACCTCTTCTTGATTCTGTTATTTCTAATGCCGTGACTCCTGGATCTGATGTATCAACAGCTTTAAGCCCTGAGGACCGTGAAGATATCTCATTGTTGTTTTTGGAGTTTGTTGACCTTTATGGAGGTGTCGAAGAACTCAGAAAGGCATGGGCTCGGCATAGTAAATTGTTTCCTCACAGCACTGGGAACATGTCACAGCATTATCCTACTATAGGAAATAGCGTTCAAGAGAATAACAAGAGGAGAAAAACAGAACATTCGATTGTTGCTCATGATCATTCTTTAGAAGATATAAGGAAATTGAAACAGACAACCAAAACTGACAATTTTTCTCTTATATTTGATAAAGAGGTTGAGTCACAAGTGGAAAGGGACATTGTGGATTCAGGAAAAGGACATAGAGATGCAGGAGAGCAGAAAGCTTTAGAGAATCTTGATTCACATGAAGAGACCAGCAGGGCATCTCAGGAATGCACTCATAGCCTGGACAAATATGGAATGCAGAACCAAATGAATTCATTTGCTAAAGAAAAGACTGATCAAGATCTGAGTTTGCATGAACAAAATGCTGAGAAAACATCTCATGAGGCTCAAAGCCACGAAGCCCCTGTAGCTGAGTCAGGCGACTGTAATTCTCCTTCCAAAGCAATTGCTAGCTCTGAAAGCATCAATTCTCAGGACAAGGTCGCTGTGGTATCTGCAAGAATCCATCGTGAAATGGTATGCTCCAAATCTGATTTGCCATCTGGATCAAGCATGCCCAAAGAAGGTGGAAGTTCTTCTGATCCAGCTCGAATATCTCCAGAGCTGGAGGAAAGGCATCATGTGGAGGTTCAGGTAAAGCTTGACACAGAGGATGGTTTGTCTGTCAGTAATGCAAACCTAGAGAGGTCTAATGATAGCCCAAACACAACTGACTGTGACAAGGTAAACTCTGCTCTTGTTCATGAGAGTCAAAATCATGTCCAATCTTCACCGGCAGAACAACTCGCAGTCTGTGCAAAACCTTCGAGCTCAGAATTAGTGAACACAAAAGCGGATACTCTGGGTTTTCAAGCTCAACTGCAAAACCAGGTGGCGAATTCTCAAACGCATCAATCTAATAACCTTTCTCTGCCTGTACAAAACATACAACAGCAAGGGCCTTCTTATACAATGGCTCAGAATGTTCAAACATCTGCACAAACTCAAGATCAACTCTTTGCACAGTCCAATCAGGGAAATCAGCAGTATCTCCAAATGACGCAAGGGTATGCATCACAAATGTGGCAGTATTATCAGCAACAACTGTATTACCTGCAGGCTCAGCACAATCAACAGATGCAGAGTCTGCAACAACAACACCTTCCAACTGAGCATCTTCAGCAAAATTTCATGCAGCAAGTGCAACAGTTGCAGCAGCAAATGGTACTTTGGCAGCAACAAGTGCAGCAGCAGCAGCAAGTAGTACTGCAACAGACAATTCCAGCTCAGCAACTCCCTGACAGAAAACAGGGTCAGCATCCTTCTTCTTCAGGGGATACCAAACATGACCAAAATAAACAGCAGCAACAAGCACCTCAAATGGATCAGCAAAGCCAACAGTTGCAGCAGCAACAGCTTCTTTATTTCCAGCAGCAGCAGCAGCAACAAATGTATCTTATGCAGCAGCAGCAGCAGGTGTACCAACAACAGCAAGCCCAGCAGCAGCAGCAGCAGCTCTTTCAGCAGCAGTTAATGCAGCAACAACAGTTTGTTCTGCAGATGCCACAGCTACAGCAAGACTCGGTTCAGCAGCAGCAGCAGCAGCAACTGTTTCAGCAACAGCAGCAGCAGATGATGCTTCTTCAGCAACAGTTTATGCAACAACAGATGCAACAGTACCTGCAACAGCAACAAAACCAACAAGGACCCAAGGACCAGACATACAACTCAAACCCTCAGGATGGAAGGACCAAGCAAATGGAGCATGGGCAACAGTCTGAAGCTTCACAGAGTGATGGTTCCAAACTGCGGAGTGGTGAACAATCTGAGTTATCCTACCCGTCAACTCCACAGTCACGCTCAAATCGCTGA
Protein:  
MYYESFRKLVTLLEQEVTSCAAGRLSDKIHTSEMIEAEDSELDISTIIADLFDQKGGHFSPEALKNYLAAGERLYKRSSKIDKEICCFEASVKRPFFHVKPLDIDQLENWHQYLDYVEKNGDFDWAVKLYERCLIPCANYSEFWIRYSEYVDAKGGREIANHALVRASSCFVKGVPTFCMYYALFKEQIGDASAARSLFVKASSNFTSGFYANINRLANMEKRMGNSKAASKIYETAIEDAMQKQNIELLQDLYSNFAQFIYAASHSIVEAKEVFVKGINRVPCKPLIKGLIQFMSTHGGPTEIPLLDSVISNAVTPGSDVSTALSPEDREDISLLFLEFVDLYGGVEELRKAWARHSKLFPHSTGNMSQHYPTIGNSVQENNKRRKTEHSIVAHDHSLEDIRKLKQTTKTDNFSLIFDKEVESQVERDIVDSGKGHRDAGEQKALENLDSHEETSRASQECTHSLDKYGMQNQMNSFAKEKTDQDLSLHEQNAEKTSHEAQSHEAPVAESGDCNSPSKAIASSESINSQDKVAVVSARIHREMVCSKSDLPSGSSMPKEGGSSSDPARISPELEERHHVEVQVKLDTEDGLSVSNANLERSNDSPNTTDCDKVNSALVHESQNHVQSSPAEQLAVCAKPSSSELVNTKADTLGFQAQLQNQVANSQTHQSNNLSLPVQNIQQQGPSYTMAQNVQTSAQTQDQLFAQSNQGNQQYLQMTQGYASQMWQYYQQQLYYLQAQHNQQMQSLQQQHLPTEHLQQNFMQQVQQLQQQMVLWQQQVQQQQQVVLQQTIPAQQLPDRKQGQHPSSSGDTKHDQNKQQQQAPQMDQQSQQLQQQQLLYFQQQQQQQMYLMQQQQQVYQQQQAQQQQQQLFQQQLMQQQQFVLQMPQLQQDSVQQQQQQQLFQQQQQQMMLLQQQFMQQQMQQYLQQQQNQQGPKDQTYNSNPQDGRTKQMEHGQQSEASQSDGSKLRSGEQSELSYPSTPQSRSNR